Saturday, 28 January 2023

Archaeology News: Archaeologists find ancient Egyptian papyrus with the Book of the Dead

 

Archaeologists find ancient Egyptian papyrus with the Book of the Dead


The papyrus scroll was fully restored and translated at Tahrir's Egyptian Museum and has been named the Waziri Papyrus after Mostafa Waziri.


Large number of animal skulls found in Neanderthal cave

JANUARY 27, 2023 **REPORT** , by Bob Yirka , Phys.org

Steppe bison cranium from Level 3. 
Credit: Nature Human Behaviour (2023). DOI: 10.1038/s41562-022-01503-7

A team of researchers affiliated with a host of institutions across Spain, working with one colleague from Portugal and another from Austria, has discovered a large number of animal skulls placed by Neanderthals in Spanish cave more than 40,000 years ago.

In their paper published in the journal Nature Human Behavior, the group describes the site where the skulls were found, their condition and theories about why the skulls were placed in the cave.

The Cueva Des-Cubierta cave located in the Madrid Region of Spain was first discovered in 1978. Since that time, archaeologists have visited and studied the multilevel cave because it became clear that Neanderthal groups used the site for conducting rituals. Bones and tools have been found in the cave, as have the remains of a Neanderthal child. In this new study, the researchers climbed to the third level of the cave to see if Neanderthals had used it, as well.

The researchers found multiple animal bones scattered on the floor in addition to an assortment of large herbivore skulls. The researchers found that the skulls had been carefully removed from the bodies and had been "worked" in different ways using tools and, in some cases, fire.

A common theme among the skulls was the display of prominent features, such as horns. Most of the skulls had once belonged to bison or aurochs, extinct cows. But they also found the skulls of five male deer (with antlers) and two rhinoceroses. The discovery of the rhinoceroses was a major surprise, and the researchers chose to name one of them Rosendo, after the famous Spanish rock star.

Gneiss anvil under an aurochs cranium.
 Credit: Nature Human Behaviour (2023). DOI: 10.1038/s41562-022-01503-7

The team notes that finding such a collection of skulls suggests that the Neanderthal groups that brought them into the cave had something in mind besides food. The skulls were large and heavy and would have provided little nourishment, suggesting their presence in the cave served some other purpose. The researchers suggest they may have represented hunting trophies.


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New research paper supports using microbiome data to develop potential probiotic therapies

JANUARY 26, 2023, by U. Hospitals Cleveland Medical Center


Credit: Unsplash/CC0 Public Domain



In a new paper published by the journal Gastroenterology, researchers from University Hospitals (UH) Cleveland Medical Center and Case Western Reserve University School of Medicine, review studies about the microbiome's role in disease and health, and discuss tactics for developing probiotics to modulate the microbiome through leveraging microbiome data. They illustrate these tactics by using Crohn's disease (CD) as an example.

According to the authors, gut microbes may influence a number of health-related issues including diseases such as CD and other degenerative diseases, including obesity, diabetes, cancer, autism and cardiovascular disease.

"The microbiome consists of bacteria, fungal and viral constituents in the gut. We have come to learn how the interaction between these communities, as well as potential interaction with the body can affect health and disease," said Senior Author Mahmoud Ghannoum, Ph.D., Director, Integrated Microbiome and the Center for Medical Mycology at UH and Case Western Reserve University.

"An imbalance of the gut microbiota composition, called dysbiosis, may initiate or exacerbate several diseases. Furthermore, the imbalance may form a biofilm, which can create a barrier to the absorption of medications and create an environment encouraging growth of harmful bacteria and fungal components," said Dr. Ghannoum, who has been studying the microbiome for decades.

In their paper, intestinal biofilms that developed in CD were targeted for modulation, and then beneficial microbial strains that could potentially interrupt and disrupt the biofilms were identified.

Through further analysis, four biotherapeutic strains of beneficial bacteria and fungi were selected due to their efficacy in neutralizing the organisms creating the biofilms.

"These strains were shown to have anti-biofilm activity and to interfere with epithelial cell damage caused by the bacteria and fungus found in CD," said Dr. Ghannoum.

In addition to the selected microorganisms, the enzyme amylase was added to the formulation to enhance biofilm abrogation.

The researchers studied the effects in mice and humans. In humans, 49 healthy volunteers enrolled to participate in four weeks of once-a-day formulation consumption.

The comprehensive intestinal microbiome, representing bacterial and fungal communities, profiles were assessed at the start of the study and following four weeks of probiotic consumption.

"The microbiome (both bacteria and fungi) of our subjects was compared with those reported by the Human Microbiome Project (HMP) for healthy subjects as a control for bacterial abundance," said Dr. Ghannoum.

"When the volunteers' microbiome profiles were analyzed, the changes indicated the effects could be of great benefit to healthy individuals with digestive issues," he said.

Following this preliminary study, another clinical study was conducted (recently completed and submitted for publication) to test effects of the formulation on healthy individuals with self-reported gastrointestinal symptoms such as flatulence, bloating, and abdominal discomfort.

"The second study showed that the formulation reduced the severity and frequency of overall GI symptoms and positively modulated specific symptoms, such as flatulence, bloating, stool regularity, constipation, and abdominal discomfort) to a statistically significant degree compared to placebo," said Dr. Ghannoum.

"In addition, the formulation appeared to improve irritability while possibly reducing anxiety, emotional stress, and improving overall score on an anxiety symptom questionnaire. Importantly, the research subjects tolerated the formulation very well in comparison to individuals who had received a placebo."

"Studies such as these and additional studies demonstrating that changes in the gut microbiome balance following probiotic modulation can be sustained by either diet modification or maintenance dietary supplementation that has been designed to address the specific microbiome profile of the target condition," he said.

Dr. Ghannoum said that the rational design and appropriate experimental and clinical studies could be applied to other cohorts of individuals based on health and demographic factors to provide insights into gut microbiota composition, microbial interplay with probiotics and potential effects on host organisms.

Through the analysis of big microbiome data sets, researchers have started to appreciate the microbiome composition differences between different cohorts of individuals. That has lead to the opportunity to leverage such data insights for targeted microbiome solution development.

"Introducing an additional or adjuvant/supporting therapy that can modulate the gut microbiota and/or prevent gut microbiome dysbiosis may be a new approach to targeted microbiome product development. Not only does this approach have the potential of restoring the microbiome balance, but it may also help achieve better response to the currently used approaches," said Dr. Ghannoum.

The probiotic formulation developed through this data-powered design process was launched in market by BIOHM Health Inc. as a general wellness probiotic. Dr. Ghannoum is co-founder of BIOHM.

"We launched BIOHM to build off this process of utilizing microbiome data to create nutritional solutions that are built off the actual microbiome profiles of thousands and metadata of real individuals, allowing for truly targeted innovation," said Afif Ghannoum, CEO of BIOHM Health Inc. and Dr. Mahmoud Ghannoum's son.

Importantly Afif Ghannoum strongly noted that the probiotic currently in market has not been proven to, nor is not intended to prevent, treat or cure CD or any other condition or disease.




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India to get more than 100 cheetahs from S.Africa

JANUARY 26, 2023, 

A cheetah from Namibia being released in India's Kuno National Park in September 2022.

South Africa said Thursday that it had reached a deal to transfer more than 100 cheetahs to India as part of an ambitious project to reintroduce the spotted cats in the south Asian country.

The environment ministry said an initial batch of 12 cheetahs would be flown to India next month, after eight cheetahs arrived from Namibia last September.

"The plan is to translocate a further 12 annually for the next eight to 10 years" to help establish a "viable and secure cheetah population," the ministry said in a statement.

India was once home to the Asiatic cheetah but the animal was declared extinct there by 1952, primarily because of habitat loss and deaths at the hands of hunters seeking their distinctive spotted hides.

Efforts to reintroduce the animals gathered pace in 2020 when India's Supreme Court ruled that African cheetahs, a different subspecies, could be brought into the country at a "carefully chosen location" on an experimental basis.

Negotiations for the deal with South Africa were long in the making, with the first cheetahs initially expected to be flown to India last August. They have been living in quarantine in the meantime.

"The cheetahs in quarantine... are all still doing well," said Adrian Tordiffe, a veterinary wildlife specialist at the University of Pretoria who is involved in the project.

Officials said the previous transfer from Namibia marked the first intercontinental relocation of cheetahs, the planet's fastest land animal.

The Namibian specimens were released at Kuno National Park, a wildlife sanctuary 320 kilometers (200 miles) south of New Delhi, selected for its abundant prey and grasslands.


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Friday, 27 January 2023

'Flying' dolphins leaping out of the sea off the coast of Yorkshire

'Flying' dolphins leap out of the water off the coast of Yorkshire in astonishing photos

  • A playful pod of bottlenose dolphins were captured leaping out of the water

Playful dolphins have been captured leaping three metres out of the water by a wildlife photographer. 

The exuberant sea mammals - which weigh around 500kg - were pictured propelling themselves several feet into the air. 

Andrew Cottrell, a wildlife photographer, was on a walk on the beach at Hunmanby Gap when he spotted a pod of about 20 bottlenose dolphins. 

The cetaceans could be seen playing about a kilometre from the shore of the Yorkshire beach. 

The pod of approximately 20 dolphins could be seen frolicking a kilometre off the Yorkshire coastline

The pod of approximately 20 dolphins could be seen frolicking a kilometre off the Yorkshire coastline

It is unusual to see the animals so close to shore during the colder months although there are regular sightings of the sea creatures

It is unusual to see the animals so close to shore during the colder months although there are regular sightings of the sea creatures 

Mr Cottrell said the dolphins looked to be 'having fun', jumping more than three meters out of the sea.  

Dolphins are extremely acrobatic and can jump up to 25 feet from the sea into the air.  

Mr Cottrell retired to Filey in October 2022 and said he chose the area because of 'its beauty, the wildlife and the people'.

The keen photographer said dolphins could often be seen off the coast but it was unusual to see them during cold snaps.  

https://www.dailymail.co.uk/news/article-11685037/Flying-dolphins-leap-water-coast-Yorkshire-astonishing-photos.html



Science News: Red algae-derived metal-polysaccharide can be anti-microbial - study

Red algae-derived metal-polysaccharide can be anti-microbial - study


Ben-Gurion University scientists have connected a metal and a polysaccharide and discovered the compound worked well against bacteria and common fungus


                                             Red algae. (photo credit: FLICKR)


As antibiotic-resistant bacteria become a growing threat and traditional sources of anti-microbial treatments become less effective, scientists around the world have been looking farther afield for promising compounds to treat wounds and infections. 

Now, researchers at Ben-Gurion University of the Negev (BGU) in Beersheba have connected a metal and a polysaccharide and discovered the new compound worked well against bacteria and common fungus (Candida albicans). This works because of the longer and denser spikes on its surface that poked holes in the membrane and killed off the bacteria and the fungus. 

Prof. Shoshana (Mails) Arad and Prof. Ariel Kushmaro, Prof. Levi Gheber and doctoral student Nofar Yehuda have just published their findings in the journal Marine Drugs under the title “Complexes of Cu–Polysaccharide of a Marine Red Microalga Produce Spikes with Antimicrobial Activity.”

Why does this compound work?

Polysaccharides are a carbohydrate with linked sugar molecules and long chains of carbohydrate molecules composed of several smaller monosaccharides. These complex bio-macromolecules function as an important source of energy in animal cell and form a structural component of a plant cell. “By adding a metal (Cu), we were able to create an effective new material,” the researchers said. The new compound is derived from the marine red microalga called Porphyridium sp. Commercialization of these new compounds could come sooner rather than later, they predicted.

“In light of the increased resistance to antibiotic and antifungal agents, there is a growing need for the development of new and improved treatments. BGN Technologies, the university’s technology transfer company, holds a patent application ready for licensing in the field," said Galit Mazooz-Perlmuter and Anat Shperberg Avni of BGN. 

Red algae. (credit: Wikimedia Commons) 

Red algae. (credit: Wikimedia Commons)

Polysaccharides are well-known due to their wide range of biological activities in various aspects such as medicine, cosmetics and foodomics, they wrote in the paper.

“However, it is well-understood that their bioactivity is dependent on their structure, which can be enhanced by certain modifications. We have thus assumed that the addition of metals to the sulfated polysaccharide of red microalgae with anion exchange capabilities [anion-exchange chromatography is a process that separates substances based on their charges using an ion-exchange resin containing positively charged groups] will enable synergism between the metal and the polysaccharide and will generate complexes with new functional activities.”

Arad is from the Goldstein-Goren Department of Biotechnology Engineering; Kushmaro is a member of the Goldman-Sonnenfeldt School of Sustainability and Climate Change and the Goldstein-Goren department, while Gheber is a member of the same department as well as at the Ilse Katz Institute for Nanoscale Science and Technology.

The longer spikes (1,000 nm) and greater density were found to be related to the superior inhibition of microbial growth and viability and biofilm formation. When Escherichia coli bacteria were exposed to the copper and polysaccharide complexes, enhanced bioluminescence accumulation was observed, probably due to membrane perforation by the spikes on the surface of the complexes and consequent cytoplasmic leakage. This study thus supports their idea that the spikes protruding from the metal and polysaccharide surfaces are responsible for the antimicrobial and antibiofilm activities of the complexes.




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There's a 'Lost City' Deep in The Ocean, And It's Unlike Anything We've Ever Seen

27 January 2023, By CARLY CASSELLA

Underwater terrain of the Lost City Hydrothermal Fields. (Lost City Research/University of Washington)

Close to the summit of an underwater mountain west of the Mid-Atlantic Ridge, a jagged landscape of towers rises from the gloom.

Their creamy carbonate walls and columns appear ghostly blue in the light of a remotely operated vehicle sent to explore.

They range in height from tiny stacks the size of toadstools to a grand monolith standing 60 meters (nearly 200 feet) tall. This is the Lost City.

A remotely operated vehicle shines a light on the spires of the Lost City.

Discovered by scientists in 2000, more than 700 meters (2,300 feet) beneath the surface, the Lost City Hydrothermal Field is the longest-lived venting environment known in the ocean. Nothing else like it has ever been found.

For at least 120,000 years and maybe longer, the upthrusting mantle in this part of the world has reacted with seawater to puff hydrogen, methane, and other dissolved gases out into the ocean.

In the cracks and crevices of the field's vents, hydrocarbons feed novel microbial communities even without the presence of oxygen.

Strands of bacteria living on a calcite vent in the Lost City.

Chimneys spewing gases as hot as 40 °C (104 °F) are home to an abundance of snails and crustaceans. Larger animals such as crabs, shrimp, sea urchins, and eels are rare, but still present.

Despite the extreme nature of the environment, it appears to be teeming with life, and researchers think it's worth our attention and protection.

While other hydrothermal fields like this one probably exist elsewhere in the world's oceans, this is the only one remotely operated vehicles have been able to find thus far.

The hydrocarbons produced by the Lost City's vents were not formed from atmospheric carbon dioxide or sunlight, but by chemical reactions on the deep seafloor.

Because hydrocarbons are the building blocks of life, this leaves open the possibility that life originated in a habitat just like this one. And not just on our own planet.

"This is an example of a type of ecosystem that could be active on Enceladus or Europa right this second," microbiologist William Brazelton told The Smithsonian in 2018, referring to the moons of Saturn and Jupiter.

"And maybe Mars in the past."

Unlike underwater volcanic vents called black smokers, which have also been named as a possible first habitat, the Lost City's ecosystem doesn't depend on the heat of magma.

Black smokers produce mostly iron- and sulfur-rich minerals, whereas the Lost City's chimneys produce up to 100 times more hydrogen and methane.

The calcite vents of the Lost City are also much, much larger than black smokers, which suggests they've been active for longer.

Nine-meter-high chimney in the Lost City. 

The tallest of the monoliths is named Poseidon, after the Greek god of the sea, and it stretches more than 60 meters high.

Just northeast of the tower, meanwhile, is a cliffside with short bursts of activity. Researchers at the University of Washington describe the vents here as 'weeping' with fluid to produce "clusters of delicate, multi-pronged carbonate growths that extend outward like the fingers of upturned hands".

Unfortunately, scientists aren't the only ones beckoned by that unusual terrain.

In 2018, it was announced that Poland had won the rights to mine the deep sea around The Lost City. While there are no precious resources to be dredged up in the actual thermal field itself, the destruction of the city's surroundings could have unintended consequences.

Any plumes or discharges, triggered by the mining, could easily wash over the remarkable habitat, scientists warn.

Some experts are therefore calling for the Lost City to be listed as a World Heritage site, to protect the natural wonder before it's too late.

For tens of thousands of years, the Lost City has stood as a testament to the enduring force of life.


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HEAVY SNOW FOR EUROPE; HISTORIC TOTALS ACROSS WESTERN U.S.; NUNAVUT SCHOOL LOWERS ‘COLD WEATHER CUTOFF’ TO -60C (-76F); + “UNPRECEDENTED” 170-STRONG HERD OF BISON SPOTTED IN POLAND

JANUARY 27, 2023 CAP ALLON


HEAVY SNOW FOR EUROPE

From Scotland to Spain, Sweden to Turkey, further bouts of heavy snows and freezing lows are on the cards for Europe.

Flakes are forecast to return to the UK Sunday evening (Jan 29), compounding the country’s ongoing energy woes–with the National Grid continuing to pay Brits to turn off their electricity during peak times to help with demand. Latest models see snow falling at a rate of 3cm-per-hour in Scotland, with potentially disruptive accumulations building across the higher elevations.

Record-challenging totals are forecast for the likes of Norway, with feet expected across the Alps and Pyrenees.

Balkan nations won’t miss out as the calendar flips to February.

Rare flurries could again clip the Costa Del Sol.

And similarly in Turkey, alarmists’ cries of “global warming = mild winter” will soon predictably morph into brainless yelps of “global warming = record-setting snow”: The eco-warriors were offered a cake but now want to eat it, too. But I recall the days when global warming meant ‘linearly-rising temperatures and decreasing snowfall’ — this was the theory doggedly promoted for the past few decades: “Snowfall will become a thing of the past”, and the rest…

GFS Total Snowfall (cm) Jan 27 – Feb 12 [tropicaltidbits.com].

What we’re seeing now (i.e. deadly Arctic Outbreaks and above-average global snowpack) has rendered the AGW theory an abject failure, yet ‘they’ won’t let it die and are instead hellbent on twisting and rewriting it to fit with real world observations that simply won’t play ball: “Global warming = global cooling”, which they say is caused by ‘polar amplification’. But if that were the case, explain the goings-on in the Southern Hemisphere where Antarctica is cooling yet polar outbreaks are simultaneously increasing?

Looking ahead, a full-blown ‘polar vortex’ is still forecast to impact Europe next month. Time will tell on that one, but the likes of Asia has been suffering its own record-setting outbreak for months now, with North America due a similar fate, starting this weekend.

HISTORIC TOTALS ACROSS WESTERN U.S.

It has been a winter for the record books in the western United States. And looking ahead, the models are in agreement that another Arctic Outbreak is about to hit, this time engulfing the majority of the North American continent.

GFS 2m Temperature Anomalies (C) Jan 28 – Feb 2 [tropicaltidbits.com].


GFS Total Snowfall (cm) Jan 27 – Feb 12 [tropicaltidbits.com].

Putting aside what’s to come, unprecedented snowfall has already clipped Western mountains this year.

The Central Sierra Snow Lab officially recorded 175 inches of snow across the Northern Sierra Nevada mountains as of Jan 19 — that’s 249% of the average for the entire month of January.

At Mammoth Lakes, a staggering 400+ inches of snow has fallen this year which is a new all-time record and led to resort officials commenting, “Most places would view what we just experienced in Mammoth Lakes as a natural disaster.”

Areas of Lake Tahoe have received 100 inches more than they did all of last year. Tahoe has met, and will certainly break, historic snowfall records this year.

While in Northern California, Mt. Shasta has received 180 inches of snowfall thus far; typically, the average snowfall for the entire season is 136 inches.



FLORIDA CHILLS

While the Northeast is still waiting on its first proper January snow (it got more than enough over the Holidays as ‘one of the worst winter storms in U.S. history’ delivered 8-feet to the likes of Buffalo, killing at least 100 people), down south, however, Florida’s Manatees are struggling with unusually-frigid conditions.

State officials reported this week that at least 56 manatees have died this month, compared to 39 during the same period in 2022 — which turned out to be the second-deadliest year on record.

According to wildlife experts, the majority of this year’s deaths can be attributed to the state’s recent severe cold spell,

NUNAVUT SCHOOL LOWERS ‘COLD WEATHER CUTOFF’ TO -60C (-76F)

The District Education Authority (DEA) in Sanirajak, Nunavut, has loosened its cold weather policy.

The Arnaqjuaq school’s former weather policy called for closure when the windchill reached between –50C and –55C (-58F and -67F). But recently, it was agreed to bump that down to –60C (-76F) so that kids miss fewer days.

January day in Sanirajak, Nunavut.



A windchill below –60C is pretty rare, even in Sanirajak, a community of fewer than 900 people on the shore of Foxe Basin in the central Arctic. But it does happen. In fact, it could happen today… Environment and Climate Change Canada issued an extreme cold warning for the community Thursday: –42C (-43.6F) is expected, with an early-morning windchill nearing –60C.

Nothing says ‘catastrophic global warming’ like lowering the cut-off for cold-weather days.

“UNPRECEDENTED” 170-STRONG HERD OF BISON SPOTTED IN POLAND

A large, 170-strong herd of bison has been spotted on the outskirts of Białowieża Forest in eastern Poland — the largest ever seen, according to local scientists.

As reported by notesfrompoland.com –and as pointed out to me by reader ‘MK’– the group was observed at the end of December by researchers who monitor bison and study their reproduction.

The researchers released the below image of the herd:


“We were surprised to see such a large number of bison in one place,” said Rafał Kowalczyk, who leads bison research at IBS PAN. “We monitor bison herds in several places in Poland and abroad, and so far the [previous] largest herd, with 136 individuals, was observed by us this winter on the outskirts of the Knyszyn forest [in Poland],” he added.

“When we saw a massive herd on the outskirts of the Białowieża Forest, we wondered if it would match the Knyszyn one.”

It did.

And more.

The record-breaking, 170-sized herd, which includes 40 calves, formed during the sudden onset of winter back in December. Heavy snowfall and a stark plunge in temperatures saw smaller herds group together to increase their chances of survival.

According to the International Union for Conservation of Nature (IUCN), the population of European bison has more than tripled in the last 20-or-so years, from around 1,800 in 2003 to over 6,200 in 2019.

Nothing quite says ‘catastrophic global warming’ and ‘ecological collapse’ like a tripling of a continent’s bison population.



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Obsidian handaxe-making workshop from 1.2 million years ago discovered in Ethiopia

JANUARY 26, 2023 **REPORT** by Bob Yirka , Phys.org

The extensive accumulations of obsidian artefacts in level C. a,b, General view of the level and detail of artefact density along the MS cliff
 (a) and inset (b). c,d, General view (c) and detail (d) of the artefact concentration (mainly handaxes) in the test pit of 2004. 
Credit: Nature Ecology & Evolution (2023). DOI: 10.1038/s41559-022-01970-1

A team of researchers affiliated with several institutions in Spain, working with two colleagues from France and another from Germany has discovered an Obsidian handaxe-making workshop from 1.2 million years ago in the Awash valley in Ethiopia. In their paper published in the journal Nature Ecology & Evolution, the group describes where the handaxes were found, their condition and their age.

The Stone Age lasted from approximately 2.6 million years ago, to approximately 3,300 BCE, when the Bronze Age began. Historians generally break the era down into the Paleolithic, Mesolithic and Neolithic periods. Prior research has shown that "knapping workshops" appeared sometime during the Middle Pleistocene, in Europe—approximately 774,000 to 129,000 years ago.

Such workshops developed as tool-making evolved into a skill. Individuals who developed such skills worked together in workshops to crank out enough of whatever tools were needed by those in the general area. One such tool was the handaxe, which could be used for chopping or as a weapon.

Handaxes were made by chipping bits off of a stone to make a sharp edge. They were not attached to anything; they were simply held in the hand when in use. The stones used were typically flint or, in latter times, obsidian—a type of volcanic glass. Obsidian, even in modern times, is considered a difficult material to work with because it is so rough on the hands. In this new effort the researchers have found evidence of an obsidian handaxe knapping workshop established far earlier than one has ever been seen before.

The researchers were working at the Melka Kunture dig site when they found a handaxe buried in a layer of sediment. They soon found more. They found 578 in all, and all but three were made of obsidian. Dating of the material around the axes showed them to be from approximately 1.2 million years ago.

Study of the axes showed them all to have been crafted in like manner, indicating that the researchers had found an ancient knapping workshop. The find marks the oldest known example of such a workshop, and the first of its kind not in Europe. The researchers note that the work was done so long ago that they are not even able to identify the hominids that made them.


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Thursday, 26 January 2023

Chatterboxes: Researchers develop new model that shows how bacteria communicate

JANUARY 26, 2023, by Bill Wellock, Florida State U.

Credit: Pixabay/CC0 Public Domain

When bacteria interact, they give off cellular signals that can trigger a response in their neighbors, causing them to behave in different ways or produce different substances. For example, they can communicate to coordinate movement away from danger or to emit light to ward off predators.

In new research published by Biophysical Reports, researchers from Florida State University and Cleveland State University lay out a mathematical model that explains how bacteria communicate within a larger ecosystem. By understanding how this process works, researchers can predict what actions might elicit certain environmental responses from a bacterial community.

"Typically, models of bacteria in synthetic environments have involved many, many equations describing many, many things, but they weren't really flexible for different applications," said co-author Bhargav Karamched, an assistant professor in FSU's Department of Mathematics and the Institute of Molecular Biophysics. "What my collaborators and I have done is to create a flexible mathematical model that can be applied to a variety of experimental settings."

Models like the one developed by Karamched's team help to predict how those bacterial communities coordinate activity, allowing designers to adjust the parameters of a community, such as the population sizes of different types of bacteria or feedback loops, and tailor them for different purposes. For example, in a population of two kinds of bacteria, having more of one kind of bacteria can be dangerous for a host organism while having more of the other can be beneficial. Getting the right mix is crucial, and models help researchers design and analyze the bacterial communities they create.

"What's lacking in synthetic biology right now are these general, flexible models that are ready off-the-shelf," Karamched said. "This may not capture all the details in a bacteria community, but it still captures the general framework of what's going on. Scientists and engineers can use that to compare against their experimental work and move forward."

The researchers also tested their model against previously published research that examined how bacteria communicate across large spatial gaps. The previous research found that the bacteria only needed a positive feedback loop in order to signal to each other. But Karamched and his collaborators' model predicts that the rate of production of signaling molecules must also be within a specific range for coordination to occur.

"This model lays the groundwork for a wide range of future experiments testing different strain interactions and geometries," said co-author Shawn Ryan, an associate professor in the Department of Mathematics and Statistics and the co-director of the Center for Applied Data Analysis and Modeling at Cleveland State University.

Ryan Godin, a former Cleveland State University student and current Iowa State University doctoral student in chemical engineering, was the lead author on this paper.


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New Species: First Primate Relatives Discovered in the High Arctic of Ancient Canada

By PLOS JANUARY 25, 2023

Artist’s reconstruction of Ignacius dawsonae surviving six months of winter darkness in the extinct warm temperate ecosystem of Ellesmere Island, Arctic Canada. 
Credit: Kristen Miller, Biodiversity Institute, University of Kansas

Fossilized mammals reveal patterns of Arctic migration in warming climates.

In the warm climate of ancient Canada, early primate relatives adapted to life in the high Arctic, albeit with limited biodiversity, according to a study published today (January 25, 2023) in the open-access journal PLOS ONE by Kristen Miller of the University of Kansas and colleagues.

The Eocene Epoch was a time of intense global warming, providing a crucial case study for examining how ecosystems react to changing climates. Fossils from Ellesmere Island, Canada provide evidence of a warm, swamp-like environment around 52 million years ago, despite half the year spent in Arctic winter darkness. In this study, Miller and colleagues identify two new species, the first primate relatives ever reported from this ancient Arctic ecosystem.

Based on fossil fragments of jaws and teeth, the researchers identified the new species as close relatives of early primates, here named Ignacius dawsonae and Ignacius mckennai. Compared to similar species from more southern localities, this pair features distinct adaptations for their unusual environment. Both species are relatively large, a common trait in northern mammals, and both exhibit dental features that suggest a diet of hard food items, possibly an adaptation for feeding on tougher foods during long, dark Arctic winters where softer meals were hard to come by.

During the Eocene, the lower latitudes of North America were home to many early primate relatives, but only these two species are known from this Arctic community, adding to previous evidence that this ecosystem experienced limited biodiversity compared to more southern habitats. The researchers suggest that while warming climates allowed certain organisms to migrate northward, such movement might be limited by factors such as long periods of Arctic darkness. Such insights are crucial for predictions about how ecosystems might react to modern warming climates.

The authors add: “Global warming is transforming Arctic ecosystems in ways that are difficult to predict, but ancient episodes of global warming show how future changes in the Arctic might unfold. The first primate-like fossils ever recovered north of Arctic Circle show that these tropically adapted mammals were able to colonize the Arctic during an ancient episode of global warming approximately 52 million years ago by adopting a new diet of nuts and seeds that enabled them to survive six months of winter darkness.”


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